Outcome
| Type |
Measure |
Description |
Time frame |
Safety issue |
| Primary |
The Difference in Frequency of Rare Deleterious Coding Genetic Variants between Subjects with Recurrent Atopic Dermatitis (AD) and a History of Eczema Herpeticum (ADEH+) Compared to Controls - Using Whole Genome Sequencing |
Whole genome sequencing methodology will be used to identify differences in frequency of rare deleterious coding genetic variants between recurrent Atopic Dermatitis (AD) subjects with a history of Eczema Herpeticum (ADEH+) and =3 Eczema Herpeticum (EH) episodes, versus controls. Controls will include (1) AD subjects without a history of EH (ADEH-); (2) non-atopic (NA) subjects without AD; and (3) general population controls from the Thousand Genomes Project. |
3 years |
|
| Primary |
The Difference in Frequency of Rare Deleterious Non-Coding Genetic Variants between Subjects with Recurrent Atopic Dermatitis (AD) and a History of Eczema Herpeticum (ADEH+) Compared to Controls - Using Whole Genome Sequencing |
Whole genome sequencing methodology will be used to identify differences in frequency of rare deleterious non-coding genetic variants between subjects with recurrent Atopic Dermatitis (AD) subjects and a history of Eczema Herpeticum (ADEH+) with =3 Eczema Herpeticum (EH) episodes, versus controls. Controls will include (1) AD subjects without a history of EH (ADEH-); (2) non-atopic (NA) subjects without AD; and (3) general population controls from the Thousand Genomes Project. |
3 years |
|
| Secondary |
Gene expression profiles in the dermis |
|
3 years |
|
| Secondary |
Gene expression profiles in the epidermis |
|
3 years |
|
| Secondary |
Gene expression profiles in in keratinocytes |
|
3 years |
|
| Secondary |
Gene expression profiles in fibroblasts |
|
3 years |
|
| Secondary |
Gene expression profiles in peripheral blood Plasmacytoid Dendritic Cells(pDCs) |
|
3 years |
|
| Secondary |
Gene expression profiles in skin tape strip samples |
|
3 years |
|
| Secondary |
Herpes Simplex Virus (HSV) replication in primary keratinocytes |
HSV replication will be assessed by HSV copy number by Polymerase Chain Reaction (PCR) or RNA sequencing. |
3 years |
|
| Secondary |
Herpes Simplex Virus (HSV) replication in fibroblasts |
HSV replication will be assessed by HSV copy number by Polymerase Chain Reaction (PCR) or RNA sequencing. |
3 years |
|
| Secondary |
Herpes Simplex Virus (HSV) replication in Plasmacytoid Dendritic Cells (pDCs) |
HSV replication will be assessed by HSV copy number by Polymerase Chain Reaction (PCR) or RNA sequencing. |
3 years |
|
| Secondary |
Herpes Simplex Virus (HSV) replication in genetically modified cell lines |
HSV replication will be assessed by HSV copy number by Polymerase Chain Reaction (PCR) or RNA sequencing. |
3 years |
|
| Secondary |
Anti-viral responses in primary keratinocytes |
Anti-viral responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]) |
3 years |
|
| Secondary |
Anti-viral responses in fibroblasts |
Anti-viral responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]) |
3 years |
|
| Secondary |
Anti-viral responses in Plasmacytoid Dendritic Cells (pDCs) |
Anti-viral responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]). |
3 years |
|
| Secondary |
Anti-viral responses in genetically modified cell lines |
Anti-viral responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]). |
3 years |
|
| Secondary |
Immune responses in primary keratinocytes |
Immune responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]). |
3 years |
|
| Secondary |
Immune responses in fibroblasts |
Immune responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]). |
3 years |
|
| Secondary |
Immune responses in Plasmacytoid Dendritic Cells (pDCs) |
Immune responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]). |
3 years |
|
| Secondary |
Immune responses in genetically modified cell lines |
Immune responses will be measured by cytokine production and antimicrobial responses (e.g. interferons [IFNs], tumor necrosis factor alpha [TNFalpha], LL-37, human beta-defensins [HBDs]) |
3 years |
|
| Secondary |
Differentiation markers in primary keratinocytes |
Differentiation markers (e.g. filaggrin (FLG), involucrin, loricrin, and Human Beta-Defensins (HBDs)). |
3 years |
|
| Secondary |
Differentiation markers in genetically modified keratinocyte cell lines |
Differentiation markers (e.g. filaggrin (FLG), involucrin, loricrin, and Human Beta-Defensins (HBDs)). |
3 years |
|
| Secondary |
Expression of reporter gene constructs testing non-coding variants |
|
3 years |
|
| Secondary |
Exploratory: Viral carriage |
Viral carriage will be assessed by presence of viral sequencing reads. |
3 years |
|
| Secondary |
Exploratory: Protein expression of epidermal differentiation complex |
Protein expression of epidermal differentiation complex will be measured by Mass Spectroscopy of skin tape strips. |
3 years |
|
| Secondary |
Exploratory: Protein expression of inflammatory genes |
Protein expression of inflammatory genes will be measured by Mass Spectroscopy of skin tape strips. |
3 years |
|
| Secondary |
Exploratory: Lipid profiles |
Lipid profiles will be measured by mass spectroscopy of skin tape strips. |
3 years |
|
| Secondary |
Exploratory: Whole-genome DNA methylation profiles from epidermis |
|
3 years |
|
| Secondary |
Exploratory: Whole-genome DNA methylation profiles from dermis |
|
3 Years |
|