Maternal Genes and Epimutations: Beckwith-Wiedemann Syndrome & Reproductive Risks

Beckwith-Wiedemann Syndrome Clinical Trial

Official title:

Role of Maternal Effect Genes and Epimutations in Beckwith-Wiedemann Syndrome and Adverse Reproductive Outcomes

Clinical Trial Details — Status: Recruiting

Administrative data

• NCT number: NCT06346418
• Other study ID #: PNRR-MR1-2022-12376622
• Status: Recruiting
• Phase: N/A
• Start date: May 19, 2023
• Est. completion date: May 2025

Study information

• Verified date: March 2024
• Source: Fondazione IRCCS Ca' Granda, Ospedale Maggiore Policlinico
• Contact: Edgardo Somigliana, PhD
• Phone: +390255034303
• Email: edgardo.somigliana[@]policlinico.mi.it
• Is FDA regulated: No
• Study type: Interventional

Clinical Trial Summary

Pathogenic variants in subcortical maternal complex (SCMC) have been identified not only in mothers of Beckwith-Wiedemann syndrome (BWS) babies but also in women with reproductive disturbances such as failed pregnancy attempts and recurrent pregnancy loss. Based on the higher incidence of BWS in children born from Assisted Reproductive Technology (ART), this project aims to investigate incidence and molecular mechanism of pathogenic variants of SCMC in women with reproductive disorders. Study objectives will be (i) assess the incidence of these variants as a cause of differences in reproductive outcomes in the infertile female population and mothers of children with BWS; (ii) identify methylation changes in women with reproductive problems including those with offspring affected by BWS; (iii) determine the molecular causes underlying female infertility and imprinting disorder associated with damaging SCMC gene variants by employing a mouse model.

Description:

The first aim of the project is to define the incidence of Maternal-Effect Genes (MEGs) and specifically of SCMC pathogenic variants as a cause of differences in reproductive outcomes in the infertile female population and mothers of BWS children. To this aim, three cohorts of patients will be recruited: healthy women with offspring affected by BWS and peculiar reproductive history from our population of clinically and molecularly diagnosed BWS families (Cohort 1), women under 35 undergoing ART for infertility (defined as failure to achieve a pregnancy after 12 months or more of regular unprotected sexual intercourses) and unable to obtain a live birth after three completed cycles or after the transfer of at least 6 blastocysts (Cohort 2), and women under 35, with RPL (Recurrent Pregnancy Loss defined as the loss of two or more pregnancies before 24 weeks of gestation) (Cohort 3).

To identify pathogenic variants, whole-exome sequencing (WES) will be performed as the first approach in all the recruited patients. WES analysis will be carried out following various steps. First, the investigators will analyze different subsets of genes, belonging to:

1. Maternal effect genes as SCMC components and other related genes;

2. Genes essential in the maturation of the oocyte and zygote progression through the early phases of the embryogenesis or highly expressed at different stages of oocyte maturation;

3. Genes with known and potential roles in the establishment and control of genomic imprinting and involved in DNA methylation reactions.

Subsequently, variants with a high pathogenicity score will be analyzed, to identify any genes that may be associated with the phenomenon, but do not belong to the previously described categories of genes. Finally, the investigators will conduct a whole genome sequencing (WGS) analysis on a selected subgroup of BWS mothers with peculiar clinical histories and negative WES analysis, to explore all the noncoding and regulatory regions not targeted by WES.

The second aim of this project is to employ whole-genome methylation analysis to identify methylation changes in women with reproductive problems including those with offspring affected by BWS. Specific tasks will be:

1. Determining the whole-genome methylation of blood leukocytes of the cohorts of women described in Aim 1 and comparing it with that of a similar number of sex- and age-matched controls;

2. Determining the whole-genome methylation of unfertilized oocytes derived from unsuccessful ART cycles of the same cohorts and comparing it with that of control oocytes (derived from either donation for research or public datasets).

DNA methylation will be determined in blood leukocytes by methylation array analysis and in unfertilized oocytes by single cell Bisulfite sequencing (scBS-Seq).

The third aim of the project is to determine the molecular mechanisms underlying female infertility and imprinting disorder associated with damaging SCMC gene variants by employing a mouse model. Specific tasks will be:

1. Determining the whole-genome methylation and RNA profiles of the Padi6 mut/mut oocytes and pre-implantation embryos obtained after IVF with wild-type sperm;

2. Transfer of the blastocysts derived from the IVF described in a) into pseudopregnant females and analysis of whole genome DNA methylation and RNA in the derived mid-gestation embryos by BS-seq and RNA-seq;

3. Mini-screening of epigenetics compounds on the 2-cell Padi6 mut/mut embryos. DNA methylation and RNA expression of the mouse oocytes and embryos will be determined by whole-genome scBS-seq and scRNA-seq.

Recruitment information / eligibility

• Status: Recruiting
• Enrollment: 208
• Est. completion date: May 2025
• Est. primary completion date: January 2025
• Accepts healthy volunteers: No
• Gender: Female
• Age group: 18 Years and older

Eligibility

Inclusion Criteria:

• Cohort 1: healthy women with offspring affected by BWS and peculiar reproductive history from our population of clinically and molecularly diagnosed BWS families;

• Cohort 2: women under 35 undergoing ART for infertility (defined as failure to achieve a pregnancy after 12 months or more of regular unprotected sexual intercourses) and unable to obtain a live birth after three completed cycles or after the transfer of at least 6 blastocysts;

• Cohort 3: women under 35, with RPL (defined as the loss of two or more pregnancies before 24 weeks of gestation).

Exclusion Criteria:

• presence of conventional and molecular karyotype alterations

• occurrence of known causes that can lead to decreased fertility or recurrent abortions: disorders of the ovaries, such as polycystic ovarian syndrome and other follicular disorders, disorders of the endocrine system causing imbalances of reproductive hormones levels, autoimmune conditions, male infertility, uterine or tubal dysfunctions and malformations, thrombophilic or noncorrected thyroid dysfunctions.

Related Conditions & MeSH terms

• Beckwith-Wiedemann Syndrome
• Syndrome

Intervention

Genetic:
• WES analysis
Whole-exome sequencing will be performed as the first approach in all the recruited patients. First, we will analyze different subsets of genes, belonging to: Maternal effect genes as SCMC components and other related genes; Genes essential in the maturation of the oocyte and zygote progression through the early phases of the embryogenesis or highly expressed at different stages of oocyte maturation; Genes with known and potential roles in the establishment and control of genomic imprinting and involved in DNA methylation reactions. Subsequently, variants with a high pathogenicity score will be analyzed, to identify any genes that may be associated with the phenomenon, but do not belong to the previously described categories of genes. Finally, we will conduct a whole genome sequencing (WGS) analysis on a selected subgroup of BWS mothers with peculiar clinical histories and negative WES analysis, to explore all the noncoding and regulatory regions not targeted by WES.
• whole-genome methylation analysis
A whole-genome methylation analysis will be performed to identify methylation changes in women with reproductive problems including those with offspring affected by BWS

Locations

Country	Name	City	State
Italy	Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico	Milan
Italy	Istituto Auxologico Italiano	Milan

Sponsors (4)

Lead Sponsor	Collaborator
Fondazione IRCCS Ca' Granda, Ospedale Maggiore Policlinico	Federico II University, Istituto Auxologico Italiano, Università degli Studi della Campania Luigi Vanvitelli

Country where clinical trial is conducted

Italy, 

Outcome

Type	Measure	Description	Time frame	Safety issue
Primary	MEG Incidence	Incidence of MEGs, particularly pathogenetic variants of SCMC, in infertile female population and mothers of children affected by BWS	WES at specific genes in all the cohorts and SNP-array will be performed following enrollment and will be finalized within month 17. The last part related to WGS on a selected subgroup of BWS mothers will be accomplished from 16 to month 20
Secondary	Compare DNA methylation	Whole-genome DNA methylation of blood leukocytes of the cohorts of women with reproductive problems including those with offspring affected by BWS and comparing it with that of a similar number of sex- and age-matched controls. Bioinformatics analysis will be used to infer differentially methylated regions from methylation data and to classify women status based on methylation profiles. Due to the complex distribution associated with whole-genome methylation profiles, dimensionality reduction techniques (e.g. PCA,MDS) and clustering methods (both hierarchical and centroidbased) will be used to assess the importance of specific regions (e.g. imprinted loci) to discriminate prioritized women from controls according to their methylation profiles.; with reproductive problems including those with offspring affected by BWS	samples collected will be evaluated for whole-genome methylation within month 20