Gene Amplification Clinical Trial
Official title:
LAMP Assay Versus PCR for Detection of blaNDM-1 and blaKPC Genes Among Carbapenem Resistant Gram Negative Isolates at Assiut University Hospitals
The aim of this work is Detection of gram-negative isolates from different clinical samples,determination the antimicrobial susceptibility pattern of gram-negative isolates to various antimicrobial agents, Molecular Detection of blaNDM-1 and blaKPC gene among gram-negative isolates by PCR, Molecular Detection of blaNDM-1 and blaKPC gene among gram-negative isolates by LAMPand,evaluation the use of the LAMP assay for rapid and cost effective detection of the blaNDM-1 and blaKPC gene among gram-negative isolates in comparison with PCR.
Carbapenem resistance in gram-negative bacteria has become a worldwide problem and has caused
a global epidemic that continues to grow..
New Delhi metallo-beta-lactamase 1 (NDM-1) enzyme that confers multi-drug resistance is
encoded by New Delhi metallo-beta-lactamase 1 gene (blaNDM-1)]. NDM-1inactivates major
classes of beta-lactam antibiotics including carbapenems by cleaving b-lactam rings. NDM-1was
reported in 11 different bacterial species including Escherichia coli, Klebsiella sp.,
Shigella boydii and Vibrio cholera indicating the potential of horizontal gene transfer.
Klebsiella pneumoniae carbapenemase (KPC) enzymes, belonging to class A (serine
carbapenemases) and inhibited by boronic acid, have rapidly become a global problem among the
Enterobacteriaceae, Pseudomonas aeruginosa and Acinetobacter baumannii .
In infectious disease therapy, administration of adequate antimicrobial agents is essential
for preventing the emergence and spread of resistant bacteria. However, conventional
antimicrobial susceptibility testing (AST), based on bacterial growth, is time consuming;
therefore, a rapid, simple assay is needed for the timely selection of appropriate
antibiotics in clinical laboratories such as loop-mediated isothermal amplification (LAMP).
LAMP, developed by the Japanese researcher Notomi, is a novel gene amplification method that
can complete DNA amplification under isothermal conditions . LAMP is a strand displacement
amplification technique , which utilizes a set of 4 to 6 specially designed oligonucleotide
primers and a specific DNA polymerase (Bst). Via the process of strand displacement
amplification, a dumbbell DNA structure is produced which serves as a template for cycle
amplification. The lack of a need for a thermocycler, the speed of the reaction and make LAMP
a promising platform for the development of a simple and sensitive near-patient tool for the
molecular detection of genes in resource-limited settings.
LAMP is the most popular and well-established nucleic acid amplification technology among
alternatives for the polymerase chain reaction (PCR) . The steps of genetic testing include
nucleic acid extraction from the specimens, gene amplification, and detection. These steps
require considerable skill and expensive equipment and facilities, making convenient testing
at any given location difficult. To overcome these limitations, a new gene amplification
method, LAMP reaction, was developed which combines rapidity, simplicity, and high
specificity .
;
| Status | Clinical Trial | Phase | |
|---|---|---|---|
| Active, not recruiting |
NCT05852964 -
Inflammatory and Anti-Inflammatory Gene Expressions in Liver Transplant Patients
|
||
| Completed |
NCT06444893 -
Morphofunctional Analysis and Gene Expression of Inflammation Molecules and Response Mechanisms to Oxidative Stress in Kidney Tissue of Deceased Patients With SARS-CoV-2 Virus Infection: "Ancestral Variant"
|